Welcome to JRCLUST’s documentation!

JRCLUST is a scalable and customizable package for spike sorting written in MATLAB and CUDA. JRCLUST runs on a local workstation (it is recommended, but not required, that you have a GPU).

The original JRCLUST paper by Jun, et al., may be found on the bioRxiv.

Table of contents

• Using JRCLUST
  • Tutorial
  • Migrating from JRCLUST v3
  • Input and output files
  • Getting started
  • System requirements
  • Usage
  • Getting help
• The JRCLUST spike-sorting pipeline
  • Bootstrapping
  • Spike detection
  • Spike clustering
  • Cluster curation
• JRCLUST parameters
  • Common parameters
  • Advanced parameters
• Developer documentation
  • The JRC handle
  • Package jrclust
  • The Clustering interface
  • DensityPeakClustering